Publications

2025

  1. Multiply Perturbed Response to Disclose Allosteric Control of Conformational Change: Application to Fluorescent Biosensor Design
    Melike Berksoz, Ali Rana Atilgan, and 2 more authors
    bioRxiv, 2025
    DOI

2024

  1. Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics Simulations
    Melike Berksoz, and Canan Atilgan
    J. Chem. Inf. Model., 2024
  2. Allosteric Modulation of Fluorescence Revealed by Hydrogen Bond Dynamics in a Genetically Encoded Maltose Biosensor
    Melike Berksoz, and Canan Atilgan
    Proteins, 2024

2022

  1. Nanobodies as molecular imaging probes
    Sarah Barakat, Melike Berksoz, and 3 more authors
    Free Radical Biology and Medicine, 2022
  2. Structural and Functional Analysis of CEX Fractions Collected from a Novel Avastin® Biosimilar Candidate and Its Innovator: A Comparative Study
    Busra Gurel, Melike Berksoz, and 7 more authors
    Pharmaceutics, 2022